PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006546-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 279aa    MW: 32474.2 Da    PI: 10.2166
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006546-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.3e-1962152199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ffkv+ p    +s rl++p +f+++++g+   +  ++l+++ gr W+v++   +  +  ++++GWkeFv++n L++g f+vF+++ +s+f   v +
  NNU_006546-RA  62 FFKVFFP--DQSSERLRVPPPFIKHFNGV--IPERVILRSRIGRFWSVEM--AQDEDNWFFQDGWKEFVQDNSLRSGYFLVFRYNYNSSF--DVLI 149
                    7888844..445567********888777..4557***************..88888899************************998999..8888 PP

                    E-S CS
             B3  97 frk 99 
                    f++
  NNU_006546-RA 150 FDS 152
                    876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-2456155IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.8E-2657154IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.32560153IPR003340B3 DNA binding domain
CDDcd100173.81E-1960151No hitNo description
PfamPF023623.9E-1662151IPR003340B3 DNA binding domain
SMARTSM010196.5E-1562153IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
NHSCLLCLHS LSFQSPKSLQ LSTGVLRSFS PVVLQRFSRE EIELEMVQAR RRAFNHDKSP  60
HFFKVFFPDQ SSERLRVPPP FIKHFNGVIP ERVILRSRIG RFWSVEMAQD EDNWFFQDGW  120
KEFVQDNSLR SGYFLVFRYN YNSSFDVLIF DSTSCEKEEF STCTNGGRRK AEEAKEDLNK  180
NTSSLKRVYF VRNPQEVRRK KCGCTQSKRA VAVEAEEERV PKAEKLVKPK EKIVTKANKL  240
DKPKNPQFTA CFSMLMAHLL AKRPFGRVSA LADFSIQRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255054.11e-174PREDICTED: B3 domain-containing protein Os03g0622200-like isoform X2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-18B3 family protein